On the contrary, I don't see how it looks bad for the school. They apparently viewed him as something of loose cannon and stood their ground. They told him that he was free to donate through a collective like most other donors, and he has chosen not to. Toss in the fact that other donors likely have made up the difference, and I doubt SU views it as a problem. Then there is the$30K payment to a player that SU didn't know about. Not sure which side that particular "accounting error" is on.
At the end of the day, AW doesn't want to donate through a collective, SU is fine with the current status of the relationship, and I can go back to not caring until the next volley from the PR machine.